PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00344-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 92aa    MW: 10488.6 Da    PI: 6.5344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00344-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-101458344
                                                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                                       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                                          +WT+e  +++ +a +++ ++   +W  +a+ +g ++t +++k ++
  augustus_masked-scaffold00344-abinit-gene-0.7-mRNA-1 14 SWTPEQNKRFEKALALYDKDtpdRWQNVAKAVGANKTTEEVKRHY 58
                                                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-4763IPR009057Homeodomain-like
PROSITE profilePS512939.0671066IPR017884SANT domain
SMARTSM007171.7E-81164IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-131370IPR009057Homeodomain-like
PfamPF002492.7E-81458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASSSLSKQN SSSSWTPEQN KRFEKALALY DKDTPDRWQN VAKAVGANKT TEEVKRHYEI  60
LLEDLRHIES GLVPIPKYRP NGSSANIDEE ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-30790385RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927209.13e-50protein RADIALIS-like 3
SwissprotQ1A1731e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2N9EXV72e-49A0A2N9EXV7_FAGSY; Uncharacterized protein
STRINGGLYMA11G12460.12e-45(Glycine max)
STRINGGLYMA12G04680.23e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-32RAD-like 1