PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00358-abinit-gene-1.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GRAS

Protein Properties

Length: 171aa MW: 20193.2 Da PI: 7.9641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00358-abinit-gene-1.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	127.6	1.5e-39	3	168	209	374
GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +l++l+ e + +es+r+ vL+l++++ P+v++ +a h+ + F rf +al ++s augustus_masked-scaffold00358-abinit-gene-1.3-mRNA-1 3 SLKNLFYEIAVVESPRNVVLNLIRKMTPHVFIQGVVNAAHGVPFFTSRFRQALFHFS 59 67778888889999***************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 +lf+++++ l+r++ er+ +E+e g++++n++aceg+er+er et ++W r +a augustus_masked-scaffold00358-abinit-gene-1.3-mRNA-1 60 TLFEMFDTYLSRDNLERMLLENESYGPQAMNAIACEGSERIERPETCKQWLLRNVRA 116 ***************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF+++pl++++ ++a+ l+ + + + ++e+s++l++gWk+r+ +++S+Wr augustus_masked-scaffold00358-abinit-gene-1.3-mRNA-1 117 GFRQLPLNQEMINTAEDRLKSRYHKDFVIDEDSQCLLQGWKGRNFFVLSFWR 168 ****************999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.181	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-37	3	168	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MYSLKNLFYE IAVVESPRNV VLNLIRKMTP HVFIQGVVNA AHGVPFFTSR FRQALFHFST 60 LFEMFDTYLS RDNLERMLLE NESYGPQAMN AIACEGSERI ERPETCKQWL LRNVRAGFRQ 120 LPLNQEMINT AEDRLKSRYH KDFVIDEDSQ CLLQGWKGRN FFVLSFWRPD C

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889824.1	1e-102	scarecrow-like protein 14
Swissprot	O80933	8e-57	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2N9ES76	9e-88	A0A2N9ES76_FAGSY; Uncharacterized protein
STRING	POPTR_0008s05750.1	9e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	4e-59	GRAS family protein