PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00362-abinit-gene-0.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 567aa MW: 62096.7 Da PI: 6.1661

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00362-abinit-gene-0.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	407	466	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK ++ Le k++ Le+eN++L e+ +l+ e+ +l+ augustus_masked-scaffold00362-abinit-gene-0.11-mRNA-1 407 KRAKRILANRQSAARSKERKTRHTADLEHKAQILETENTTLSAEVTKLQRESLALQ 462 9******************************************************* PP HHHC CS bZIP_1 61 seve 64 se++ augustus_masked-scaffold00362-abinit-gene-0.11-mRNA-1 463 SENK 466 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-15	403	467	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.5E-9	404	457	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.599	405	468	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-10	407	462	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-10	407	463	No hit	No description
CDD	cd14703	2.01E-18	408	457	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGGTNENGAG MPGLQSTFGL KPKNQFDVQN FNTLQKGVPM RQLPQNLSPS SENSNKRPGI 60 PPSHPNNSVN SMQYSQFTGS RPASRQPGSQ NLSPGPSHTR SLSQPSFFML DSLPPLSPLP 120 SMSSLSDPIM TDVSMEESVV NSHAQPHGGN GGNAFRVGEG LPPRKGGHRR SNSDNLPLGF 180 SAMIQASPQL MPIGNRGVLE RSVSGRENSG AEKPATLVMK SELKRDRDGN NIADGTGEGK 240 SEGEISDDLI NVYMNFENID KMNSSGTEEK DLDSRASGSR TNGCDSSDNE VESRINGYPN 300 SLQGLSSGFS NEKREGKRIA GGETTPTVRH YRSVSMDSYM ESLNFDDESP KLPPIGTGVG 360 QHLPSNVIDG NSSKFSMELG NVEFSDAELQ KIKENAKLTE IALSDPKRAK RILANRQSAA 420 RSKERKTRHT ADLEHKAQIL ETENTTLSAE VTKLQRESLA LQSENKELKF RLQAMEQESK 480 LKDALNETLT TEVQRLRLAA SECGGEGYLA NLMAQQLSIN QQMFQFQHAQ PRQLYQLSQE 540 QQHLLQQQAQ LQPQQQNCDT GDQETNQ

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGGTNENGAG MPGLQSTFGL KPKNQFDVQN FNTLQKGVPM RQLPQNLSPS SENSNKRPGI  60
PPSHPNNSVN SMQYSQFTGS RPASRQPGSQ NLSPGPSHTR SLSQPSFFML DSLPPLSPLP  120
SMSSLSDPIM TDVSMEESVV NSHAQPHGGN GGNAFRVGEG LPPRKGGHRR SNSDNLPLGF  180
SAMIQASPQL MPIGNRGVLE RSVSGRENSG AEKPATLVMK SELKRDRDGN NIADGTGEGK  240
SEGEISDDLI NVYMNFENID KMNSSGTEEK DLDSRASGSR TNGCDSSDNE VESRINGYPN  300
SLQGLSSGFS NEKREGKRIA GGETTPTVRH YRSVSMDSYM ESLNFDDESP KLPPIGTGVG  360
QHLPSNVIDG NSSKFSMELG NVEFSDAELQ KIKENAKLTE IALSDPKRAK RILANRQSAA  420
RSKERKTRHT ADLEHKAQIL ETENTTLSAE VTKLQRESLA LQSENKELKF RLQAMEQESK  480
LKDALNETLT TEVQRLRLAA SECGGEGYLA NLMAQQLSIN QQMFQFQHAQ PRQLYQLSQE  540
QQHLLQQQAQ LQPQQQNCDT GDQETNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900242.1	0.0	probable transcription factor PosF21 isoform X1
Refseq	XP_023900250.1	0.0	probable transcription factor PosF21 isoform X1
TrEMBL	A0A2N9E1Q6	0.0	A0A2N9E1Q6_FAGSY; Uncharacterized protein
STRING	XP_008221306.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2272	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-105	bZIP family protein