PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00454-abinit-gene-1.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 206aa    MW: 23463.2 Da    PI: 6.5323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00454-abinit-gene-1.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-2090140155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++y+GVr ++ +g+W++eIrd +     + kr +lg+f taeeAa+a+++a+  ++g
  augustus_masked-scaffold00454-abinit-gene-1.1-mRNA-1  90 KKYRGVRLRP-WGKWASEIRDpW-----KaKRKWLGTFQTAEEAARAYDKAAIVFRG 140
                                                           59********.**********88.....66**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3791154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3191149IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2391150IPR016177DNA-binding domain
PfamPF008473.7E-1191140IPR001471AP2/ERF domain
PROSITE profilePS5103223.70991148IPR001471AP2/ERF domain
CDDcd000183.71E-3292150No hitNo description
PRINTSPR003676.8E-1192103IPR001471AP2/ERF domain
PRINTSPR003676.8E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDGLDASSIY KWCPWRSRIT AEQEHDIMVS VLKLVITGGI QGLTPQQFLL LQQKPVQPSA  60
ATSLSNSTSG ASSSSTKRSS KKKNNDNNEK KYRGVRLRPW GKWASEIRDP WKAKRKWLGT  120
FQTAEEAARA YDKAAIVFRG PRARLNFPLS DYVQVEDQLH EQVHNHEIDP NVNAETQIVE  180
VPESSDEENE LWDSLTTEEL ERLLKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2190149161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923446.11e-112ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2N9FQR64e-51A0A2N9FQR6_FAGSY; Uncharacterized protein
STRINGXP_010666622.12e-36(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-20redox responsive transcription factor 1