PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 691aa    MW: 76946.6 Da    PI: 6.187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.92.6e-1293096751373
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           lv+lL++c+ea+  ++++++++++a+l elasp+g+p+ Rl +y+teALa r++r +
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 309 LVSLLIACVEAIGVRNTAAIHHFIAKLGELASPKGSPISRLSTYYTEALAIRVTRLW 365
                                                           689****************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           ++ +++ +p+e + +  +e+ +al+l+++vsPi+kf h+t N+ +l+a+eg++rvHi
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 366 PQFFHINAPRELD-RVDDESGTALRLLNQVSPIPKFLHFTSNEILLRAFEGKDRVHI 421
                                                           *******999998.5678888999********************************* PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                                                           iDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 422 IDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEA 474
                                                           ***********************************....****************** PP

                                                  GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228
                                                           l++pfef++ v++rled++l++L+vk++E++aVn+++q+h++l + +  +   +++L
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 475 LNLPFEFHP-VVDRLEDVRLWMLHVKEQESVAVNCIFQMHKTLYDGTGGA--LRDFL 528
                                                           *********.7********************************6655444..489** PP

                                                  GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                                                            l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp +s+ r k+
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 529 GLIRSTNPTIVLMAEQEAEHNDPRLETRVSNSLKYYSAIFDSIGSSLPLDSSVRLKI 585
                                                           ********************************************************* PP

                                                  GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                                                           E+  +grei+n+vaceg++r+erhe++ekWr+ +e+ GF+ + ++e+++ q ++ll+
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 586 EEI-FGREIRNIVACEGRDRFERHERFEKWRKLIEQGGFRCLGITEREMLQSQMLLK 641
                                                           **9.***************************************************** PP

                                                  GRAS 343 kvksdgyrveee...sgslvlgWkdrpLvsvSaW 373
                                                           +++ + ++v+++     +l+lgW d+pL++vSaW
  augustus_masked-scaffold00487-abinit-gene-0.3-mRNA-1 642 MYSCENFSVKKQgqdGVALTLGWLDQPLYTVSAW 675
                                                           ***999****6644244566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.828283653IPR005202Transcription factor GRAS
PfamPF035149.0E-127309675IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSMSTQRL DLPCTFSRKD TSRSQPIRPV  60
GLSVEKPIES KTSTCSLKQN IRLPPLATSA QTTNAQTAFI EAAKREIKDE FWGEKGKSLK  120
KKRFAEQGSV DESCISRAKR KRGSSDNGKS NDILEGGGDS LSLGQLGAGN FWFQPSFEVS  180
RNFTGLINPP QVPFTLTCSG DEERVCYVPG EVIQQPLSNN PWVNSVVTEI TVTDLGEKDG  240
ETSHGPVKEA SGSSTSSESQ SLGLRLHENV SEQEVGNGSN RNPYSYDVNE VEAGEEDNNN  300
QVEHQGFELV SLLIACVEAI GVRNTAAIHH FIAKLGELAS PKGSPISRLS TYYTEALAIR  360
VTRLWPQFFH INAPRELDRV DDESGTALRL LNQVSPIPKF LHFTSNEILL RAFEGKDRVH  420
IIDFDIKQGL QWPSLFQSLA SRTNPPSHVR ITGIGESKQE LNETGDRLAG FAEALNLPFE  480
FHPVVDRLED VRLWMLHVKE QESVAVNCIF QMHKTLYDGT GGALRDFLGL IRSTNPTIVL  540
MAEQEAEHND PRLETRVSNS LKYYSAIFDS IGSSLPLDSS VRLKIEEIFG REIRNIVACE  600
GRDRFERHER FEKWRKLIEQ GGFRCLGITE REMLQSQMLL KMYSCENFSV KKQGQDGVAL  660
TLGWLDQPLY TVSAWAPIDV AGSSSSYSHP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-692956775380Protein SCARECROW
5b3h_A2e-692956774379Protein SCARECROW
5b3h_D2e-692956774379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120141KKRFAEQGSVDESCISRAKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887366.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2N9I3Z90.0A0A2N9I3Z9_FAGSY; Uncharacterized protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein