PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Trihelix
Protein Properties Length: 254aa    MW: 28767.3 Da    PI: 9.7039
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.25e-1429112186
                                               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCke 52 
                                                            +W++  + +Li+a  ++  +l+rg+l++++W+ev++++  r+ g+  +++ +qCk+
  augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1  29 CWSEGATETLIDAWGDRYVQLNRGNLRQKDWKEVADAVnnRQNGVkpRKTDIQCKN 84 
                                                            7*************************************9977788656799***** PP

                                               trihelix  53 kwenlnkrykkikegekkrtsessstcpyfdqle 86 
                                                            +++ l+k+yk +k+          s++p++ +l+
  augustus_masked-scaffold00491-abinit-gene-0.10-mRNA-1  85 RIDTLKKKYKVEKAKPPP------SKWPFYYRLH 112
                                                            ***********9998886......5799998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2727114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDRPGPRHAT RPSSGSGSGG GGGGGREDCW SEGATETLID AWGDRYVQLN RGNLRQKDWK  60
EVADAVNNRQ NGVKPRKTDI QCKNRIDTLK KKYKVEKAKP PPSKWPFYYR LHSLIGAANA  120
VNKKPTTVTF TVKPKSNPNP TPTDSDEDDV VVRKNRVESA DFSDGAACKE LARAILKFGE  180
IYERIESSKQ QQMMELEKQR MEFTKDLEFQ RMNMFMDAQL EIEKSKRAKY SPSSGDNFVK  240
DSVFAYLFSD SYFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903719.11e-138trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2N9IWG81e-126A0A2N9IWG8_FAGSY; Uncharacterized protein
STRINGEOY177211e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-70sequence-specific DNA binding transcription factors