PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00491-abinit-gene-0.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 178aa MW: 19629.4 Da PI: 8.5631

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00491-abinit-gene-0.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.2e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeered 56 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red augustus_masked-scaffold00491-abinit-gene-0.11-mRNA-1 11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQRED 66 6***************************************************** PP DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++sl+yeAear+rdPvyG++g i lq+++ +l++ela ++++ augustus_masked-scaffold00491-abinit-gene-0.11-mRNA-1 67 TVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHELAIARAR 110 *************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.85	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKSHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHELAIARAR LARYAAVASS 120 SSTPPSLSSS TILDDRICKA PCPDAFSCNG LSYSFTQSPS DLSRYGPVND FGQIPYVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	6	115	6	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	6	115	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903720.1	1e-111	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-65	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2N9IWP1	6e-95	A0A2N9IWP1_FAGSY; Uncharacterized protein
STRING	XP_010067552.1	1e-88	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-60	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]