PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00494-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 303aa    MW: 33276.5 Da    PI: 7.218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00494-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20175224255
                                                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                             y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  augustus_masked-scaffold00494-abinit-gene-0.12-mRNA-1 175 NYRGVRQRP-WGKWAAEIRDPR----KaTRVWLGTFTTAEEAARAYDRAAIEFRG 224
                                                            59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.277175232IPR001471AP2/ERF domain
SMARTSM003802.7E-40175238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-33175232IPR001471AP2/ERF domain
PfamPF008472.8E-14175224IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23175234IPR016177DNA-binding domain
CDDcd000185.12E-36175232No hitNo description
PRINTSPR003674.6E-12176187IPR001471AP2/ERF domain
PRINTSPR003674.6E-12198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYNPSKRTKI NQNPISQHSS LTPPPMPPLQ HHRLSTEDEL SVMVAALTNV VSGSSSTSAA  60
ATATANQQFY GYPWLPSPPT FDGAAAASTS SPTSTGTDCT DTFLPPSSEL DTCHVCNIDG  120
CLGCNFFPPP PTQQYTTTDY HHRRQHQQEK KIAVSSGSGS SKKQTQQKQQ RVKKNYRGVR  180
QRPWGKWAAE IRDPRKATRV WLGTFTTAEE AARAYDRAAI EFRGPRAKLN FPFSDYTGAN  240
SSNSSDLRTT AENSAEIEVT NLIGNGNQDN NFVDEHWEEW MMTLMNGGDS SDSAGNTSNA  300
LSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24174233161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896297.11e-159ethylene-responsive transcription factor ERF109
TrEMBLA0A2N9HVK11e-92A0A2N9HVK1_FAGSY; Uncharacterized protein
STRINGEOX982561e-68(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-34redox responsive transcription factor 1