PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00495-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 562aa    MW: 60109.6 Da    PI: 5.2599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00495-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09379427355
                                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                            +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  augustus_masked-scaffold00495-abinit-gene-0.6-mRNA-1 379 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 427
                                                           58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17374445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-11374431No hitNo description
PROSITE profilePS5088815.485376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16377444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6379427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDMVGGDKDK FELESRNEED PMNFAAPSPS PSVDWRFGGL VPTGNPMAVS KGSTSMVVDS  60
FGPTLWDQSQ TANPQNLGGL FSDINNVQNS AGNSDTLGIR KGTPAAVVTL PSIDHKTFDM  120
GWNPTSAVLN LKGGGGIFLP GNGMLPQSLS QFPADSAFIE RAARFSCFNV NGGNFSDMVN  180
PLESMGGTNY FRGGGMMQEV FGGNGQSHSQ KNEVMNVDEA FKDVSMSVGE HEHEHGATGG  240
GGSPLKNVRS HDEAKQGIGV GGSGPGNDSD EAEFSTAGGQ DEPSVLEGTT GGERFAGGLE  300
SKKRKRSEQD TELDLAKVGP QQPGESAKDD TEIQQNGDQK PTSTTNKSSG KHGKQGSQAS  360
DPPKEEYIHI RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII  420
NYVQSLQRQV EFLSMKLATV NPRLDFNVEG LLSKDILQSR AGPSRLGFSP DMPMAYPPLH  480
SSQQGLIRAG LSGLGSSSDL HRRTINSQLT PMTGGFKEPT RLPNVWEDEL HNVVQMSYGT  540
SATPNSQDVD GSLPPGHMKV EL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889939.10.0transcription factor bHLH49-like
RefseqXP_023889940.10.0transcription factor bHLH49-like
TrEMBLA0A2N9EVC90.0A0A2N9EVC9_FAGSY; Uncharacterized protein
STRINGEMJ269270.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-115bHLH family protein