PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 473aa    MW: 52714.9 Da    PI: 5.8288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.31.4e-141494701374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1  49 LIHLLLTCANHVAAGSLENANIALEQISQLASPDGDTMQRIAAYFTEALADRILKAW 105
                                                           689****************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           ++l kal++++ +   +see+ ++klf+e++P++k++++++NqaI+ea+ege++vHi
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 106 PGLHKALNSTKLT--LVSEEILVQKLFFELFPFMKVAFVLTNQAIVEAMEGEKMVHI 160
                                                           *******999998..7***************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                                                           iD+++ +++QW+aL+q L++Rpegpp+lRiTgv++    ++e le+++ +L++ Ae+
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 161 IDLNAAEPAQWIALIQVLSARPEGPPHLRITGVHQ----QREVLEQMAFKLTEEAEK 213
                                                           ***********************************....9***************** PP

                                                  GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.............. 214
                                                           l++pf+fn+ v+++l++l++e+Lrvk+gEala+++vlqlh+ll              
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 214 LDIPFQFNP-VVSKLDNLDFEKLRVKTGEALAISSVLQLHSLLasddellrkkspla 269
                                                           *********.799******************************************** PP

                                                  GRAS 215 ..........................................desvsles..erdev 227
                                                                                                        +sl+   + d +
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 270 pknlngihlpgvlpinqstlgellekdlvnghsrspdsatssP--LSLSAsaKMDGF 324
                                                           **************************************99553..44433347899* PP

                                                  GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                                                           ++++++l Pk++v++eq+++hn+++++er+leal+ y+alfd+le+++pr+  er k
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 325 VNALWGLTPKLMVITEQDSNHNGSTLMERLLEALYSYAALFDCLESTVPRT-LERLK 380
                                                           ***********************************************9886.79*** PP

                                                  GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                                                           +E++l+g+ei+n++acegaer+erhe+lekW +rl+ aGF+++pls++ + qa++ll
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 381 LEKMLFGEEIKNIIACEGAERKERHEKLEKWVQRLDLAGFGNLPLSYYGMLQARRLL 437
                                                           ********************************************************* PP

                                                  GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           + ++sdgy+++ee+g++v++W+dr+L+svSaWr
  augustus_masked-scaffold00555-abinit-gene-1.2-mRNA-1 438 QGYGSDGYKIKEENGCVVICWQDRALFSVSAWR 470
                                                           ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.71623450IPR005202Transcription factor GRAS
PfamPF035144.8E-13949470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAPMFQDEGS SSVTSSPLQL FSMMSLSPNL GSPYPFVREL KSEERGLYLI HLLLTCANHV  60
AAGSLENANI ALEQISQLAS PDGDTMQRIA AYFTEALADR ILKAWPGLHK ALNSTKLTLV  120
SEEILVQKLF FELFPFMKVA FVLTNQAIVE AMEGEKMVHI IDLNAAEPAQ WIALIQVLSA  180
RPEGPPHLRI TGVHQQREVL EQMAFKLTEE AEKLDIPFQF NPVVSKLDNL DFEKLRVKTG  240
EALAISSVLQ LHSLLASDDE LLRKKSPLAP KNLNGIHLPG VLPINQSTLG ELLEKDLVNG  300
HSRSPDSATS SPLSLSASAK MDGFVNALWG LTPKLMVITE QDSNHNGSTL MERLLEALYS  360
YAALFDCLES TVPRTLERLK LEKMLFGEEI KNIIACEGAE RKERHEKLEK WVQRLDLAGF  420
GNLPLSYYGM LQARRLLQGY GSDGYKIKEE NGCVVICWQD RALFSVSAWR CRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-59334722380Protein SCARECROW
5b3h_D1e-59334722380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]