PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00580-abinit-gene-1.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 62aa MW: 7191.45 Da PI: 10.8429

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00580-abinit-gene-1.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	104.4	4e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s augustus_masked-scaffold00580-abinit-gene-1.0-mRNA-1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.529	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.92E-38	2	61	No hit	No description
SuperFamily	SSF55455	5.62E-31	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	5e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	5e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	5e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	5e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	5e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	5e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	5e-21	1	61	1	61	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ148295	6e-87	DQ148295.1 Castanea mollissima AGL2-like MADS box 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622386.1	2e-37	PREDICTED: MADS-box protein CMB1-like
Refseq	XP_022850778.1	3e-37	MADS-box protein EJ2-like
Swissprot	Q7Y040	4e-37	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A2N9HF95	1e-36	A0A2N9HF95_FAGSY; Uncharacterized protein
STRING	cassava4.1_033922m	2e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	3e-38	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]