PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00719-abinit-gene-0.21-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 247aa MW: 26915.8 Da PI: 6.7493

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00719-abinit-gene-0.21-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	52.1	1.5e-16	7	36	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl+h+kSHLQkYRl augustus_masked-scaffold00719-abinit-gene-0.21-mRNA-1 7 EATPKTIMRTMGVKGLTLYHLKSHLQKYRL 36 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	3.4E-10	6	37	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.3E-15	6	37	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-6	7	39	IPR009057	Homeodomain-like
Pfam	PF14379	5.4E-27	79	125	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLMFTAEATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKQS CKESTETSKD ASCIAESQDT 60 GSSSPSSRMM AQDLNDGYQV TEALRVQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE 120 KACKALNDQA AATAGLEAAR EELSELAIKV SNECQGLAPL ETIKVPSLCD IAAALENSNA 180 SNLPARIGDC SVESCLTSTG SPVSPMGMGS QAAVLKKRPR TFFGNGDSLP LEGNMRQDVE 240 WMMANIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	220	LKKRPRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023911221.1	1e-161	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	2e-99	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2N9G4L5	1e-156	A0A2N9G4L5_FAGSY; Uncharacterized protein
STRING	XP_006420903.1	1e-145	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	7e-84	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]