PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 433aa    MW: 47150.5 Da    PI: 5.1637
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.7e-113684303374
                                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 
                                                            lLl+cAe+vs ++l  a+ lL ++ el+sp+g++ qR+ a+f+ AL+ar+  s+ +
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1  68 GLLLQCAECVSVDNLDDATDLLPEIAELSSPYGSSPQRVGAFFAHALQARVITSCLG 124
                                                           58******************************************************* PP

                                                  GRAS  60 lykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiD 116
                                                           +y+ l++++ + ++s++ ++al+ ++ +sP++kfsh+taNqaI +a++ge+rvH+iD
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 125 VYSPLSSKTLTLTQSQKIFSALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVID 181
                                                           ********************************************************* PP

                                                  GRAS 117 fdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                                                           +di+qGlQWp L++ LasR+++  s+R+Tg+gs    s+e l +tg+rLa+fA++lg
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 182 LDIMQGLQWPGLFHILASRNKKIRSMRVTGFGS----SSELLDSTGKRLADFATSLG 234
                                                           *********************************....99****************** PP

                                                  GRAS 174 vpfefnvlvakrledl.eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdev 227
                                                           +pfef+++ + ++ +l ++++L ++p  gEa++V++++  h l+d ++s        
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 235 LPFEFQPV-EGKIGNLkDPSQLGLRPgeGEAIVVHWMH--HCLYDITGSDLG----A 284
                                                           *******6.555555549********999999999999..777777777777....9 PP

                                                  GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                                                           L+l+  l+Pk++++veq+++h ++ Fl+rf++al+yysalfd+l   +l+++s er+
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 285 LRLLTLLRPKLITIVEQDLSH-GGGFLARFVDALHYYSALFDALgGDGLGADSVERH 340
                                                           *********************.678*******************999********** PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           +vE++l+g ei+n+va  g +r+  +e++e+W + l+++GF+pv+l  + a+qa+ll
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 341 MVEQQLFGCEIRNIVAVGGPNRTG-EEKVERWGNELGRVGFRPVSLAGNPAAQASLL 396
                                                           *********************666.577***************************** PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l +++++gy++ ee+g+l lgWkd +L+++SaW+
  augustus_masked-scaffold00731-abinit-gene-0.3-mRNA-1 397 LGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 430
                                                           *********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.25840410IPR005202Transcription factor GRAS
PfamPF035141.6E-11068430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLQSLVPQSP ISDMNPKRVD RDDSSGDETT TATKRRNLSD EASVSGEKAL VEELHRDESE  60
SSGLRLLGLL LQCAECVSVD NLDDATDLLP EIAELSSPYG SSPQRVGAFF AHALQARVIT  120
SCLGVYSPLS SKTLTLTQSQ KIFSALQSYN SISPLIKFSH FTANQAIFQA LDGEDRVHVI  180
DLDIMQGLQW PGLFHILASR NKKIRSMRVT GFGSSSELLD STGKRLADFA TSLGLPFEFQ  240
PVEGKIGNLK DPSQLGLRPG EGEAIVVHWM HHCLYDITGS DLGALRLLTL LRPKLITIVE  300
QDLSHGGGFL ARFVDALHYY SALFDALGGD GLGADSVERH MVEQQLFGCE IRNIVAVGGP  360
NRTGEEKVER WGNELGRVGF RPVSLAGNPA AQASLLLGMF PWKGYTLVEE NGCLKLGWKD  420
LSLLTASAWQ PSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-161524315380Protein SCARECROW
5b3h_A1e-161524314379Protein SCARECROW
5b3h_D1e-161524314379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919370.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2N9G3560.0A0A2N9G356_FAGSY; Uncharacterized protein
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-170GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]