PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

BBR-BPC

Protein Properties

Length: 223aa MW: 24930.3 Da PI: 7.1504

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	29.6	2e-09	15	101	32	122
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 ++erd +i+e ++al ek++a+aerd a ++rd+a+ae +k ++e ++l al ++e augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 15 VQERDMAIQELKIALFEKEEALAERDRAIQERDAAIAE-HKLILESYDALNALYFRE 70 45666666777777777778888888888888888888.777788888999999988 PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqqlsepqleds 122 s++ + + g ++++g k+ + ql++ augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 71 SSMNddksITVSLGNGISPGPKHG-------HDQLSEA 101 887744332333344444444443.......3444443 PP
2	GAGA_bind	224.1	1.2e-68	110	223	187	301
GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243 k e++ ++ +ln+v++Dest+P+PvCsCtG +qCYkWGnGGWqSaCCt+++S+yP augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 110 LKIEWE-TESGLNKVNFDESTMPAPVCSCTGEVQQCYKWGNGGWQSACCTIKMSMYP 165 556665.5779******************************************** PP GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 LP ++++r aR++grKmS+++f+klL +L ++G++ls pvDLk+hW kHGtn++ ti augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 166 LPHVPNKRRARVGGRKMSGSVFSKLLCRLMDDGHNLSAPVDLKNHWGKHGTNRYSTI 222 ******************************************************* PP GAGA_bind 301 r 301 + augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 223 K 223 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.5E-67	1	223	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.8E-66	109	223	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MQTYMTIVAE KDVAVQERDM AIQELKIALF EKEEALAERD RAIQERDAAI AEHKLILESY 60 DALNALYFRE SSMNDDKSIT VSLGNGISPG PKHGHDQLSE AALSTRNVPL KIEWETESGL 120 NKVNFDESTM PAPVCSCTGE VQQCYKWGNG GWQSACCTIK MSMYPLPHVP NKRRARVGGR 180 KMSGSVFSKL LCRLMDDGHN LSAPVDLKNH WGKHGTNRYS TIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023884391.1	1e-143	protein BASIC PENTACYSTEINE6-like
Refseq	XP_023884392.1	1e-143	protein BASIC PENTACYSTEINE6-like
Swissprot	F4JUI3	5e-69	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A151RQK4	4e-76	A0A151RQK4_CAJCA; Uncharacterized protein
STRING	GSMUA_Achr1P03770_001	7e-72	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6905	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-71	basic pentacysteine 5