PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00762-abinit-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 335aa    MW: 36473.1 Da    PI: 8.6758
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00762-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.8e-19248281134
                                                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                                            C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  augustus_masked-scaffold00762-abinit-gene-0.10-mRNA-1 248 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 281
                                                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.662242278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15245305No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14246279IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.46E-15247294No hitNo description
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16248281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGSSLFDDN INGVLDENFD DIFRIFDFPL EDVEGNVGVE DWNVKFQGLE QPSLDFLTSY  60
SCGPSPKNGN DALKFPNGND AVKFPEVVNI STLHDETSPL KGLPVTVEAT SSRSALLHKP  120
SDVKGLRLFQ TSSPVSVLES SSSCSVENPT TVDPKTTIPV KRARNKRPRP SKSNSQFRVP  180
FFCSTSSASK ISHPSAAFES GSETSDLSET ASNPSKKKMR KKKNLSVLSG ATEMGNFSLE  240
EPVATRKCMH CEVTKTPQWR EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVSSLHS  300
NSHKKVVEMR KKGSFGARMA DMDTLSSSMP TVSTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905138.10.0GATA transcription factor 11
TrEMBLA0A2I4EJH01e-121A0A2I4EJH0_JUGRE; GATA transcription factor 11-like isoform X1
TrEMBLA0A2N9HVJ61e-121A0A2N9HVJ6_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.24e-46GATA transcription factor 10