PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00774-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 135aa    MW: 14986.9 Da    PI: 9.9815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00774-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.22.5e-11105126122
                                                           ---SS-EEEEEEE--TT-SS-E CS
                                                  WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                                           ldDgy+WrKYGqK vk+s +pr
  augustus_masked-scaffold00774-abinit-gene-0.4-mRNA-1 105 LDDGYRWRKYGQKAVKNSVYPR 126
                                                           59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-1291126IPR003657WRKY domain
SuperFamilySSF1182901.57E-998127IPR003657WRKY domain
PROSITE profilePS5081112.576100126IPR003657WRKY domain
SMARTSM007740.0017105135IPR003657WRKY domain
PfamPF031062.6E-7106127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEGQNSPTPS SLPPNNMTPP FLFTPSLDPE IDWISLLSTA QPAGFPSAEN NIKPIMELSG  60
STNGVVLDHE KGNNNNKDKR KSGGRIKKAT RPRFAFQTRS ADDILDDGYR WRKYGQKAVK  120
NSVYPRCAGY SFIIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877759.11e-78probable WRKY transcription factor 43
TrEMBLB9RDY71e-34B9RDY7_RICCO; WRKY transcription factor, putative
STRINGXP_002511926.12e-35(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.26e-19WRKY DNA-binding protein 43