PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00787-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 184aa MW: 20900.9 Da PI: 6.6759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00787-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H augustus_masked-scaffold00787-abinit-gene-0.6-mRNA-1 32 YECTFCKRGFTNAQALGGHMNIH 54 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	23	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.89E-7	29	58	No hit	No description
SMART	SM00355	0.0097	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.468	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MESIKQGSSE TSSEESDHLE QVRDDTGSRR SYECTFCKRG FTNAQALGGH MNIHRKDRAK 60 AKQLTSSSSH SNKSNEDCFP SRYISPVSRE PSEYFTVLEA QRQRNYHMYF QPSSASSPRH 120 PHANFHQSDF IASRSQSLSM NQDLFGVNLS LRIGPMHVED DGMKRAVSEA DELDLELRLG 180 HDPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881475.1	1e-114	zinc finger protein 10-like
TrEMBL	A0A2N9IRT1	2e-93	A0A2N9IRT1_FAGSY; Uncharacterized protein
STRING	EOY05962	1e-73	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	3e-16	C2H2 family protein