PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00919-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 244aa    MW: 27637.1 Da    PI: 6.7106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00919-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171659146
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                                           rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  augustus_masked-scaffold00919-abinit-gene-0.14-mRNA-1 16 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 59
                                                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-7122IPR009057Homeodomain-like
SuperFamilySSF466891.61E-19170IPR009057Homeodomain-like
PROSITE profilePS5129425.7511165IPR017930Myb domain
SMARTSM007172.7E-151563IPR001005SANT/Myb domain
PfamPF002497.4E-161659IPR001005SANT/Myb domain
CDDcd001675.25E-132059No hitNo description
Gene3DG3DSA:1.10.10.601.4E-192360IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR  60
VQKQARQLNI ESNSKTFLEA VRCFWMPRLL QKMEQTSSPI STPNCSLTTM NAQGSSTPLS  120
PNPIASSLSP SYIPPRNLLH SESYPTENSS SITSPSIHSS DSLKISELPQ VPEHPAGPFH  180
AFGNTVYNTD CHFVDGSIYN MEALNLDPIS AMGAYQNSLL DCHMADSDWL SDNMAESLWN  240
MNEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1526545108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929640.11e-162transcription factor MYB62-like
TrEMBLA0A2N9FPI31e-131A0A2N9FPI3_FAGSY; Uncharacterized protein
STRINGXP_008243255.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-62myb domain protein 62