PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00932-abinit-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 158aa    MW: 17570.5 Da    PI: 10.6384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00932-abinit-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00114062123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                           ++C+ C++ F++   L  H  +H
  augustus_masked-scaffold00932-abinit-gene-0.15-mRNA-1 40 FVCKTCNRQFPSFQALGGHTASH 62
                                                           89*********999998887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-838108No hitNo description
PfamPF139124.9E-123964IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2864067IPR007087Zinc finger, C2H2
SMARTSM003550.284062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139128.6E-1085110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.36986113IPR007087Zinc finger, C2H2
SMARTSM003550.5386108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKRVRDIGEV QTIDMANCLM LLSKVGQIDS TKNNSRTRAF VCKTCNRQFP SFQALGGHTA  60
SHKKPRLRAG DLLHNMPSSP VKPKTHECSI CGLGFSIGQA LGGHMRRHRA AMSEGFVVNN  120
NRLVQAVPIM KKSNSKRVLC LDLNLMPLEN DPKLCSWE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897057.18e-92zinc finger protein ZAT11-like
SwissprotQ9SLD41e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2N9GXB14e-91A0A2N9GXB1_FAGSY; Uncharacterized protein
STRINGXP_010043590.12e-56(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-41C2H2 family protein