PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01057-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 258aa    MW: 28714.7 Da    PI: 9.315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01057-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003691113123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++C k F ++  L  H++ H
  augustus_masked-scaffold01057-abinit-gene-0.5-mRNA-1  91 FECQYCLKEFANSQALGGHQNAH 113
                                                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-687118No hitNo description
Gene3DG3DSA:3.30.160.602.3E-588117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42791118IPR007087Zinc finger, C2H2
PfamPF139121.1E-591115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAKVESNTNS NHFQSPTRDR ENGYSASSNA EKKLKLFGVE LIPSKNDESN MKGSAEGDES  60
ANSSTTTVSS ERDKKLSKER SLIGGLDDKK FECQYCLKEF ANSQALGGHQ NAHKKERMKK  120
KRLQLQARKA SLNCYLQPYS QAFANSNGNS TVPWFYSPSS EFTVYDESQI CFNNPFDQDA  180
HVNGSQLSKL YAVPAQVSFQ QDSCTFTLTH SDRSGENRPN NIFKPSALPA SKQSYKSLDL  240
QLGMSMQANI RSSSRSGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824395.11e-103PREDICTED: zinc finger protein 5
TrEMBLA0A2N9E1381e-136A0A2N9E138_FAGSY; Uncharacterized protein
STRINGEOY003281e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-21zinc finger protein 5