PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01081-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 360aa    MW: 39844.2 Da    PI: 4.6056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01081-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1870120155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           + y+GVr++  +g+WvAeIr+p   + r kr +lg+f++a +Aa a+++a+++++g
  augustus_masked-scaffold01081-abinit-gene-0.1-mRNA-1  70 CNYRGVRQRI-WGKWVAEIREP---N-RgKRLWLGTFDSAADAALAYDEAARAMYG 120
                                                           56*****998.**********8...3.35***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-3470130No hitNo description
PfamPF008473.4E-1370120IPR001471AP2/ERF domain
PROSITE profilePS5103221.98371128IPR001471AP2/ERF domain
SMARTSM003805.8E-3871134IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2171130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3171130IPR001471AP2/ERF domain
PRINTSPR003674.8E-97283IPR001471AP2/ERF domain
PRINTSPR003674.8E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLVQILNSVD MDSCRKRKSS GDGVSVAQRL AKWKEYNAQL NESKPARKVP AKGSKKGCMK  60
GKGGPENWQC NYRGVRQRIW GKWVAEIREP NRGKRLWLGT FDSAADAALA YDEAARAMYG  120
VSARLNFPDS VNHRLLTESA RDCCSISTLS GPCSMGTPAG SDSITTTNHS EVCFPNVKSD  180
NVEGESGMNK LNSEFTEADD MPSSIVKTEV KDETLTAKEH NSSDMHDVNQ ELKNEATGVM  240
NNCRDNEQDY LQDYSVDEMF DVEGLMALLD NNPFGNTDSV MGFDFDADQV GFPGRNQCEN  300
PSNVSYELQN PDAKLLGSLN HMEKAISGAD YFLDFLKSDE LDKNNGVNGY LDLGLPDFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1971128260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1971132567ATERF1
3gcc_A3e-1971132567ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905978.10.0dehydration-responsive element-binding protein 2C-like isoform X1
TrEMBLA0A0M4L9999e-90A0A0M4L999_9ROSA; AP2/EREBP family transcription factor-like protein 8
STRINGXP_008233818.15e-88(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.19e-45ERF family protein