PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

TCP

Protein Properties

Length: 213aa MW: 22667.6 Da PI: 8.6709

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118	1.2e-36	51	158	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaike 61 r+ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i++ augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1 51 PRTRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIA 106 699*************************************************** PP TCP 62 ltgtssssaseceaesssssasnsssg........................k 89 +tg+++ +a++++++s s+s++s + + augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1 107 ATGSGTVPATASSTSSPTLSSSAHSVPcriqplsavsgglgmfsmaqpqpsQ 158 **999997776666666666556557777776677754443333332220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-31	53	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.249	53	107	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGSDMVLHFS EQDPTKQVPP TPSTTTTTAA AAAATAKTAT PKTQVSAHSL PRTRDRHTKV 60 NGRGRRVRMP ALCAARIFQL TRELGHRSDG ETIEWLLRQA EPSIIAATGS GTVPATASST 120 SSPTLSSSAH SVPCRIQPLS AVSGGLGMFS MAQPQPSQQP SCRLDLCQPM GMDYAAAAAA 180 SNGYRHMPFT ALLLQPTATE EAEEKQREEV LRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900787.1	1e-109	transcription factor TCP11
Swissprot	Q9SJK7	1e-45	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A2I4EMD4	1e-85	A0A2I4EMD4_JUGRE; transcription factor TCP11-like
STRING	XP_004156285.1	2e-71	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	3e-37	TCP family protein