PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 464aa    MW: 53273.7 Da    PI: 6.9269
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.17.2e-90834611373
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++lLl  A+a+++++   a + L++l +++s +gd++qR++ayf+ +Laarl+   
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1  83 LIHLLLITATAIDQNKVGSALENLSELYQNVSLNGDSVQRVVAYFADGLAARLLTRK 139
                                                           689****************************************************9* PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..... 109
                                                           s  y+ +  ++t+    +ee+ a++ ++ vsP+++f+h+taNq I ea+e+e     
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 140 SPFYDMIMKEPTN----EEEFIAFTHLYRVSPYYQFAHFTANQSIIEAFEREeainn 192
                                                           ****999888887....6777888999************************955554 PP

                                                  GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetger 164
                                                           +++H+iDfdis+G+QWp+L+q+L++++  +++ slR+T++g+    s eel+et++r
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 193 RTLHVIDFDISYGFQWPSLIQSLSEKAssGNQISLRVTAFGR----SLEELQETENR 245
                                                           555**********************99755566*********....9********** PP

                                                  GRAS 165 LakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                                           L +f + + +++fef+ l    l   +l  L+ k++E+l+Vnlv+ l +l  + +++
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 246 LVSFSKGFrNLTFEFQGL----LRGSKLIYLQKKKHETLVVNLVFYLDTLT-NYLEV 297
                                                           ******9758*******8....55666679999*************99997.44444 PP

                                                  GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                                                           +    ++Lk + sl+P +v++veqe +++s  Fl  f+e+l+y++a+fdsl+  lp 
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 298 S----DTLKSIHSLKPSIVILVEQEGSRSSRGFLSTFMESLHYFAAMFDSLDDCLPL 350
                                                           4....5*************************************************** PP

                                                  GRAS 278 eseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsek 332
                                                           es er  +E+ llg+ei+ ++   + +     +he++e W++r+e+  F++ +ls+k
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 351 ESAERLGIEKNLLGKEIKGLLNYDNISgiNCPKHEKKEIWKARMESHAFRAGKLSSK 407
                                                           *********************999888455779************************ PP

                                                  GRAS 333 aakqaklllr......kvksdg.....yrveee.sgslv.lgWkdrpLvsvSaW 373
                                                            + qaklll+       +++dg     +rv e+ +g ++ lgW+dr+L+++S W
  augustus_masked-scaffold01165-abinit-gene-0.8-mRNA-1 408 SMIQAKLLLKirthycPHQFDGessggFRVFERdDGRAIsLGWQDRSLLTASLW 461
                                                           ********97332222122333333347776543666767************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.47157429IPR005202Transcription factor GRAS
PfamPF035142.5E-8783461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEDTYEEEDL LNLSLAIVTN SGRDERTRKR KRRDTLSPMQ QHSYEGCEEK IFRLVQMREQ  60
MLKLESHKVR KAIVVEDGNG LHLIHLLLIT ATAIDQNKVG SALENLSELY QNVSLNGDSV  120
QRVVAYFADG LAARLLTRKS PFYDMIMKEP TNEEEFIAFT HLYRVSPYYQ FAHFTANQSI  180
IEAFEREEAI NNRTLHVIDF DISYGFQWPS LIQSLSEKAS SGNQISLRVT AFGRSLEELQ  240
ETENRLVSFS KGFRNLTFEF QGLLRGSKLI YLQKKKHETL VVNLVFYLDT LTNYLEVSDT  300
LKSIHSLKPS IVILVEQEGS RSSRGFLSTF MESLHYFAAM FDSLDDCLPL ESAERLGIEK  360
NLLGKEIKGL LNYDNISGIN CPKHEKKEIW KARMESHAFR AGKLSSKSMI QAKLLLKIRT  420
HYCPHQFDGE SSGGFRVFER DDGRAISLGW QDRSLLTASL WHCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-499146126377Protein SCARECROW
5b3h_D5e-499146126377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905589.10.0scarecrow-like protein 21
TrEMBLM5VGL50.0M5VGL5_PRUPE; Uncharacterized protein
STRINGEMJ002090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.14e-50GRAS family protein