PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01203-abinit-gene-0.13-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 174aa MW: 20176.7 Da PI: 6.6344

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01203-abinit-gene-0.13-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	3.8e-16	85	143	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ augustus_masked-scaffold01203-abinit-gene-0.13-mRNA-1 85 RKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHTLIDKLNRVTESHEQVL 140 79****************************************************99 PP HHH CS bZIP_1 61 sev 63 +e+ augustus_masked-scaffold01203-abinit-gene-0.13-mRNA-1 141 QEN 143 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-16	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	83	146	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.75E-13	85	136	No hit	No description
Pfam	PF00170	5.4E-14	85	143	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-12	85	158	No hit	No description
CDD	cd14702	3.98E-21	86	136	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MVPGEITGIH YLAPETPISI PASFGMMKSM SNTPNLYFNR FLSNLPNFHF PPPGHEFTSQ 60 SSCLSNNSTS DEADEEHQLS IIDERKQRRM ISNRESARRS RMRKQKHLDE LWSQVLRLRT 120 ENHTLIDKLN RVTESHEQVL QENARLKEEA VDLRQMLTEL QIGSPYTTAL RDLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918580.1	1e-124	basic leucine zipper 43
Swissprot	Q9FMC2	5e-38	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A2N9HRN4	1e-107	A0A2N9HRN4_FAGSY; Uncharacterized protein
STRING	cassava4.1_022183m	7e-84	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	8e-48	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]