PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01213-abinit-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 256aa MW: 27847.5 Da PI: 6.353

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01213-abinit-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.6	2.5e-30	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpee 52 +C++C++lr++C+++C+++p++ p++q++++ +++k++G++ +++l++a pe+ augustus_masked-scaffold01213-abinit-gene-0.9-mRNA-1 4 SCNGCRILRKGCSDSCTIRPCLqwiktPESQANATFFLAKFYGRAGLINLINAGPEH 60 6****************************************************** PP DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+++e++l augustus_masked-scaffold01213-abinit-gene-0.9-mRNA-1 61 LRPAIFKSLLYEACGRIVNPIYGSTGLLWAGSWQLCQAAVEAVLK 105 *************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.388	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MRLSCNGCRI LRKGCSDSCT IRPCLQWIKT PESQANATFF LAKFYGRAGL INLINAGPEH 60 LRPAIFKSLL YEACGRIVNP IYGSTGLLWA GSWQLCQAAV EAVLKGLPIT QVSSESAFKA 120 CDIRHVSKEE IQRPSDQLHK VKSRRSRFKK SSAASKLKPK VESVSDELAG DTWNVKKMSH 180 EDELGTSENP SCGGGAEAET ETETDCVSAE TVEASLAKSD ERADGSDVEL DLDLSLGLGN 240 WDRVTCKVDV DLVAHA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023926086.1	1e-156	LOB domain-containing protein 40-like
Swissprot	Q9M886	4e-74	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2N9IN49	1e-108	A0A2N9IN49_FAGSY; Uncharacterized protein
STRING	XP_006485788.1	4e-94	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-73	LOB domain-containing protein 41