PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01221-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 255aa    MW: 28947.4 Da    PI: 6.5
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01221-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-141463147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                                                          rg+WT +Ed++l ++++ +G g W+  +r+      gRt++++k++w++ 
  augustus_masked-scaffold01221-abinit-gene-0.6-mRNA-1 14 RGAWTVQEDKILTEYIRIHGEGKWRNLPRRAAgrlPGRTDNEIKNYWNTN 63
                                                          89***************************9999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-18567IPR009057Homeodomain-like
SuperFamilySSF466892.37E-13866IPR009057Homeodomain-like
PROSITE profilePS5129417.353968IPR017930Myb domain
SMARTSM007172.7E-121366IPR001005SANT/Myb domain
PfamPF002491.4E-111464IPR001005SANT/Myb domain
CDDcd001678.25E-121664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSACCAKV GLNRGAWTVQ EDKILTEYIR IHGEGKWRNL PRRAAGRLPG RTDNEIKNYW  60
NTNLGKRVGD PQCPNQTPKH SCANKSKQAP KKSNLSTHVI RTKAIRCSKV LLTPQPPSQY  120
EHCFSSMELE TVRTGHQILD IGQLSTNNKL VESDTYEDKN HLNSLDFMMN FNMEEDCLTD  180
LLSSDFPDMC DIINYSNTDT RRNDLSSTSE QPLIFSQQWP QDWTTSDCVQ LQPNVATNLQ  240
SLPSLLDSGE EWLAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899027.11e-158transcription factor TT2-like
TrEMBLA0A2N9IMI02e-96A0A2N9IMI0_FAGSY; Uncharacterized protein
STRINGEOY302979e-68(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-23MYB family protein