PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01226-abinit-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 253aa    MW: 28365 Da    PI: 10.5037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01226-abinit-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-14100145247
                                                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                            ++WT+eE+  ++ + ++lG+g+W+ I+r++ +++t+ q+ s+ qky
  augustus_masked-scaffold01226-abinit-gene-0.11-mRNA-1 100 MPWTEEEHHMFLVGLEKLGKGDWRGISRKFVTTKTPTQVASHAQKY 145
                                                            69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.43493150IPR017930Myb domain
SuperFamilySSF466892.69E-1795151IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1897148IPR006447Myb domain, plants
SMARTSM007179.9E-998148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-999145IPR009057Homeodomain-like
PfamPF002491.9E-11100145IPR001005SANT/Myb domain
CDDcd001676.98E-8101146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MARKCSHCGN MGHNSRTCNT RKRSGNFRLF GVQLDISSSS SFSPSFVMRK SFSMECLPSS  60
STTSSSSSSI LAMDEKFDQV CNGYVSDGLI ARNQERKKGM PWTEEEHHMF LVGLEKLGKG  120
DWRGISRKFV TTKTPTQVAS HAQKYFLRHN NHNKRKRRPS LFDLGRNNFR PQLVNSCVFN  180
PSSEAASVSF EFPSKRTNTK VLDHGKVGYS EWPSSTNYSM PISFHNNIVE SLPAHAASGL  240
TTKLTLHTSK CNP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888409.11e-160probable transcription factor At5g61620
RefseqXP_023888410.11e-160probable transcription factor At5g61620
SwissprotQ9FKF92e-47M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A2I4GQ252e-67A0A2I4GQ25_JUGRE; myb-like protein J
STRINGVIT_11s0016g02410.t016e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-48MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]