PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

TCP

Protein Properties

Length: 258aa MW: 27618 Da PI: 8.5305

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	68	152	2	85
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+ augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1 68 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 124 789**************************************************** PP TCP 59 ikeltgtssssasec.eaesssssasns 85 i++ tgt++++as+ a++s+s++++s augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1 125 IIAHTGTGTIPASALaAAGASVSQQGTS 152 **********9996555555555432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-31	73	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.543	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDPKGSTAKQ PPQGVPNFLS LPQPQHHQQQ QQEQEQEQEP NMGENKPAEI KDFQIVIADK 60 EEGKKQLAPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ 120 AEPSIIAHTG TGTIPASALA AAGASVSQQG TSLSAGLHQK IDELGGSSIG SGSRTSWPMV 180 GANLGRPHVA SALWPPVTGF GFQSSSGPST TNLATESSNY LQKIGFSGFD LPPTNMGPMS 240 FTSILGGIVH SQIAWVLD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023923268.1	1e-141	transcription factor TCP20
Swissprot	Q9LSD5	5e-69	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2N9IAC0	1e-139	A0A2N9IAC0_FAGSY; Uncharacterized protein
STRING	VIT_14s0068g01690.t01	1e-129	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-66	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]