PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01291-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 499aa    MW: 55682.7 Da    PI: 5.7402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01291-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12327372454
                                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                           +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  augustus_masked-scaffold01291-abinit-gene-0.8-mRNA-1 327 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 372
                                                           799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-5125217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-18324388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-14326376No hitNo description
PfamPF000106.9E-10327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16327387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLPQE TPPTLQQRLQ FIVQSQPEWW AYAIFWQTTN ASDNGHHLFL  60
SWADGHFQGT KDTSPKLSHI NTHYPISMLH SERRKFMRDI QSSILSTTTT TNNDNSLDHM  120
SINADVTDTE WFYVMSLTRS FSVGDGVLGK AFGTNSLVWL TGGHELQFYN CERAKEAQMH  180
GVETLVCIPT SCGVLELGSQ DIIRENWGLV QQVKSFFGSD LIGLVPKQAN QSSPSPIQFL  240
DRNISFADIG IIAGIQEEDD SQEEHRKGGV LEGSAKKECV KLGGQSSYVD SEHSDSDCPL  300
IAVNNIEKRT PKKRGRKPGL GRDTPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS  360
LLSDAVSYIN ELKTKIDELE SQLQRESKKV KLEMTDTMDN QSTTTSVDQT RPVNTNSGSV  420
LEVEVKMVGP DAMIRVQSEN VNYPGARLMG ALRDLELQVH HASMSCVNEL MLQDVVVKVP  480
EGLRAEEALK SALLGRLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-34182172192Transcription factor MYC3
4rqw_B2e-34182172192Transcription factor MYC3
4rs9_A2e-34182172192Transcription factor MYC3
4yz6_A2e-34182172192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880894.10.0transcription factor MYC2-like
TrEMBLA0A2N9EQ730.0A0A2N9EQ73_FAGSY; Uncharacterized protein
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-87bHLH family protein