PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 233aa MW: 26533.9 Da PI: 5.1397

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.5e-10	123	228	2	96
EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS.-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesg.rsWe 47 k+lt+sd ++s+rl +p + + +h ++++ ++ +t+ d+++ +e augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1 123 TKTLTKSDIGSSSRLLVPQSLVHAHimaffsadsvKKIECNGLSVTVFDRDSkSDYE 179 699***************************8885555677789999977736799 PP EEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE-.SSSEE..EEEE CS B3 48 vkliyrkksgryvltkGW.keFvkangLkegDfvvFkld.grsefelvvkv 96 + ++ + +s++yv+ + W ++Fv +Lk+gD++ ++ d +s+f ++ v augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1 180 LVFKKWPSSKSYVFNGKWhEDFVARRKLKVGDIIGLYWDpCHSKF--NFCV 228 99999*********446**************65333555..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.49E-14	120	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.87E-18	120	229	No hit	No description
SMART	SM01019	8.9E-4	122	232	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.7E-14	122	226	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.6E-7	123	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MIPITQNLLQ TLENQNTQNY STDLTLSCEL HTELNACNEE EEEEEAMILD DDGTQNLLQT 60 LENQNTQTLS CVFNTKQEQK EVSTALTLFD KPWVSSNTMR KSTQKDEYAV ATKLSAVSPW 120 KITKTLTKSD IGSSSRLLVP QSLVHAHIMA FFSADSVKKI ECNGLSVTVF DRDSKSDYEL 180 VFKKWPSSKS YVFNGKWHED FVARRKLKVG DIIGLYWDPC HSKFNFCVLQ TAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023880111.1	1e-135	B3 domain-containing protein At2g33720-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF579	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	1e-30	B3 family protein