PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01309-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 255aa    MW: 28060.5 Da    PI: 4.1419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01309-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19452355
                                                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  augustus_masked-scaffold01309-abinit-gene-0.2-mRNA-1  4 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 52
                                                          56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-30359No hitNo description
PROSITE profilePS5103220.692360IPR001471AP2/ERF domain
SMARTSM003803.8E-33366IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21461IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-28460IPR001471AP2/ERF domain
PRINTSPR003673.1E-8415IPR001471AP2/ERF domain
PfamPF008475.8E-12652IPR001471AP2/ERF domain
PRINTSPR003673.1E-82642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MWRFLGVRRR PWGRYAAEIR DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGLRARTNFV  60
YSDMPPGSSV TSIVSPDEPQ QNFFDVPPPS STPTQPDPTP QTYSNQETNT EFSYSSMSDI  120
GGDQFWASSS SSSVYYQQQP ALFGFDNNIS STASVSHNYS NQMCDQLPPF PSDISGDIGS  180
NMSVADSSED MGQAAWSDST SLSTGLEPVG NGSYSYMGMG FDSSEYVHSP LFSRMPPVSD  240
NVPESFNLGS SAFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19459359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879910.11e-162ethylene-responsive transcription factor LEP-like
TrEMBLA0A2N9HUV01e-112A0A2N9HUV0_FAGSY; Uncharacterized protein
STRINGXP_006446887.17e-76(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-44ERF family protein