PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 586aa    MW: 66348.5 Da    PI: 7.2943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002787108223
                                                            EETTTTEEESSHHHHHHHHHHT CS
                                                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                                            +C  Cg+ F +   L  H+r H
  augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1  87 VCRVCGRGFESLRALFGHMRHH 108
                                                            7*******************99 PP
2zf-C2H211.10.0013117137222
                                                            EETTTTEEESSHHHHHHHHHH CS
                                                zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                                             C+ Cgk F +   L++H  +
  augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1 117 YCEECGKGFGSLKALTTHRHR 137
                                                            5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-5635No hitNo description
PfamPF139122.0E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.24931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655938IPR007087Zinc finger, C2H2
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
SMARTSM003550.02486108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07486113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-787135No hitNo description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139123.9E-688110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93116141IPR007087Zinc finger, C2H2
SMARTSM003550.91116140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
PfamPF139124.7E-4118142IPR007087Zinc finger, C2H2
SMARTSM003550.1417439IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011417444IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-6417439No hitNo description
PfamPF139122.9E-8417440IPR007087Zinc finger, C2H2
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-6495522No hitNo description
SMARTSM003550.76500522IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-9500523IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265500527IPR007087Zinc finger, C2H2
PROSITE patternPS000280502522IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGQDQEQRHV CKLCNKSFMN GRVLGGHMRC HSHTNHNPTK GQKKLCKSNM DIENGIGRHT  60
RYGLREKPKM SLKLSGSNHD TSGQEVVCRV CGRGFESLRA LFGHMRHHSG RERSGIYCEE  120
CGKGFGSLKA LTTHRHRKSH SERVVVCDES WTSSSHKTEM ENQSNSEIRG LMRRKRSNRM  180
RYKTTPNSFV SGLNESVSCT DIEQDVEEVA ICLMMLSRGI GNWGGFNLVT EFSDNDSVTY  240
EAKSLEQNKR VVSDDGGGIF ACEFNESLKM KKPRVEEFGS YVSDSKIVST ENDFGFGSDD  300
EKIELEVPLE KFYRDGECKM PKMEDVFGLA SYNDKTNKDI RNELKNKPTE VELEEDFTED  360
YSLDSANSGS RNFGLNKKAK LAACGSHLRG KSCKKKCTSD DSAILSKSNH SWENSEYKCK  420
TCNKNFHSYQ ALGGHQSIHR TENCPVLEIW NRKTSSQSNI VPETEANFEV VNLECRENSE  480
EQKISRVSLK SYEFKERKEH KCHICFKVFA SGQALGGHKR AHLIKNSEVI SEETVVIKEE  540
ISDILNIVGI DLPIILEEDT NVDVGFKSLW VEIDQKHELM GGLIPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929776.10.0uncharacterized protein LOC112041111
TrEMBLA0A2I4EB150.0A0A2I4EB15_JUGRE; uncharacterized protein LOC108987965
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-20C2H2-like zinc finger protein