PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25276.1 Da    PI: 7.9288
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-222671449
                                                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                                           ++  ++qvtfskRr+g++KKA+EL+vLC+aevav +fs++ ++y +
  augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1 26 DDRGKQQVTFSKRRTGLFKKASELCVLCGAEVAVFVFSQKKNMYSF 71
                                                           677789**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.0481575IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-271574IPR002100Transcription factor, MADS-box
CDDcd002651.52E-301684No hitNo description
SuperFamilySSF554552.09E-251686IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-181737IPR002100Transcription factor, MADS-box
PfamPF003198.4E-222771IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-183752IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-185273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVLEKRVMTK GKKSIGRQRI EIKELDDRGK QQVTFSKRRT GLFKKASELC VLCGAEVAVF  60
VFSQKKNMYS FGHPNVETIL ERYLAGKTMS DSSSSSQELV PVDEFNRQYD QLQKELEKEK  120
MHLAEIEEMN KKMKNTNVGF WWDEPFDENM GLEEMEQYMK ALQEVRRKVG ARIEEFRMPR  180
TSLMQPMNMP MGLGNDFVNV NSWESNACGG FLCWNNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871107.11e-147agamous-like MADS-box protein AGL61
TrEMBLA0A2N9GYY57e-81A0A2N9GYY5_FAGSY; Uncharacterized protein
STRINGXP_002532452.11e-50(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-39AGAMOUS-like 61