PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01347-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 235aa    MW: 26131 Da    PI: 6.714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01347-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1752100355
                                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           + GVr+++ +grWvAeI+d s   ++ r +lg+f+++eeAa+a++ a++ l+g
  augustus_masked-scaffold01347-abinit-gene-0.0-mRNA-1  52 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDSPEEAARAYDSAARLLRG 100
                                                           67******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.18E-3251108No hitNo description
SMARTSM003801.4E-3451114IPR001471AP2/ERF domain
PROSITE profilePS5103220.77151108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2851108IPR001471AP2/ERF domain
PRINTSPR003673.3E-75263IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1952109IPR016177DNA-binding domain
PfamPF008471.0E-1154100IPR001471AP2/ERF domain
PRINTSPR003673.3E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDSLESSGIP LEPQNLCKNY AQTPLDGEKV HENEEKRSMK FPKGVTSNGR RFLGVRQRPS  60
GRWVAEIKDS SQKLRLWLGT FDSPEEAARA YDSAARLLRG RNAKTNFPCH GNMNSHEEST  120
SLLGKNPRLF QLLQHAITKN HARSSSLFPD EIIPWNDHIT GDKVDLNHFD TLVEETIVCS  180
SNSESAGSCG FDHDRNMLSQ PSFGSSKVYS SVFVAPSFSA SLCQVGEDQK NSQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1743115679Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874740.11e-163ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2N9F4G51e-115A0A2N9F4G5_FAGSY; Uncharacterized protein
STRINGVIT_17s0000g04480.t017e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-27related to AP2 11