PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01519-abinit-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 352aa    MW: 38926 Da    PI: 4.3765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01519-abinit-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19121171155
                                                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                                            s+y+GVr++k +g+W+AeIrd +     + +r++lg++ t+eeA +a+++ r+++e
  augustus_masked-scaffold01519-abinit-gene-0.16-mRNA-1 121 SKYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTYNTPEEASEAYERKRLEFE 170
                                                            89*******9.**********55.....45***********************998 PP

                                                    AP2  55 g 55 
                                                             
  augustus_masked-scaffold01519-abinit-gene-0.16-mRNA-1 171 A 171
                                                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-24121169No hitNo description
PfamPF008471.1E-12121171IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17121170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-22122173IPR001471AP2/ERF domain
SMARTSM003801.6E-18122185IPR001471AP2/ERF domain
PROSITE profilePS5103219.888122180IPR001471AP2/ERF domain
PRINTSPR003671.1E-9123134IPR001471AP2/ERF domain
PRINTSPR003671.1E-9145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPEPRKQPAK SKKSTATIPS GESSITMMRK VRVICSDPYA TDSSSSEDEC ENRRAKKCKK  60
FIREINLPLV LKQQSKPSTL ESESSCQDSN NNNGTKTPNI VEARQKKRVL AKTPSRRPSS  120
SKYRGVRQRK WGKWAAEIRD PFKGARIWLG TYNTPEEASE AYERKRLEFE AAMALSSATP  180
VVTASASSEK SNNASTSTAV VSPSQNNQQP VSSEDSEGVL SHTSPASVLE LETSASNTKG  240
NATDFITDEC FEVTNAEISL AELQIPDDLG LMDETFVDVP FEQELNFEPE SEFDPLCFDN  300
IGQFFDGYSG LEDIEICGFD NDGPSELPDW DFADIGNDIA SWMDEPLNIP CQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15123175356ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885153.10.0ethylene-responsive transcription factor ERF119-like
TrEMBLA0A2N9G6T81e-158A0A2N9G6T8_FAGSY; Uncharacterized protein
STRINGXP_008243412.11e-100(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-38ERF family protein