PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01570-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 255aa    MW: 27687.4 Da    PI: 8.4904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01570-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-202272256
                                                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                           +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g+
  augustus_masked-scaffold01570-abinit-gene-0.12-mRNA-1 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRGA 72
                                                           69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-132271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-322279IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-222280IPR016177DNA-binding domain
SMARTSM003806.9E-382285IPR001471AP2/ERF domain
PROSITE profilePS5103223.8542279IPR001471AP2/ERF domain
CDDcd000186.35E-312279No hitNo description
PRINTSPR003675.4E-112334IPR001471AP2/ERF domain
PRINTSPR003675.4E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPRERAVKG NGNGNGIGKE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAR  60
AYDTAAREFR GAKAKTNFPF PIENANDVNN NKIDNNNNNN NNVNCHSNNQ SPSQSSTVES  120
PTRDPSALLV ESSPLDLNIA QSHAYGGAAA GFGSVPVRFP FQQQHHHSGF FAGGPPAAAN  180
HMIYFDTVVR AGMLPSHPYS QLNFDHFQPA ATFSGGVQSD SDSSSVVDLN HRDQKPQKLG  240
ILGLDLNQPP PPEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211479572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6099740.0AB609974.1 Castanea crenata mRNA, microsatellite: PEA14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929659.11e-117ethylene-responsive transcription factor 4-like
TrEMBLA0A2N9EIY04e-98A0A2N9EIY0_FAGSY; Uncharacterized protein
STRINGEOY281802e-71(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-27erf domain protein 9