PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 147aa    MW: 16301.1 Da    PI: 5.1915
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.52.9e-352871499
                                                DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72
                                                          +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dP
  augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1  2 PDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVAPHQREDAVNSLAYEAEARIKDP 60
                                                          79********************************************************* PP

                                                DUF260 73 vyGavgvilklqqqleqlkaelallke 99
                                                          vyG+vg i+ lq+q+ +l++el+++++
  augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1 61 VYGCVGAISVLQRQVIRLQKELDATNA 87
                                                          **********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.035189IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-34286IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPDCIFAPYF PPEEPQKFAN VHKIFGASNV SKLLNEVAPH QREDAVNSLA YEAEARIKDP  60
VYGCVGAISV LQRQVIRLQK ELDATNADLI RYACNANEMP TSSQFGRRNM SHGGGSFGQN  120
SGMYYHYSPW NNEPGEDSNE RGGDGNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-5619423116LOB family transfactor Ramosa2.1
5ly0_B3e-5619423116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888698.11e-108LOB domain-containing protein 25-like
RefseqXP_023888699.11e-108LOB domain-containing protein 25-like
SwissprotQ8L8Q33e-57LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A2N9FIQ72e-93A0A2N9FIQ7_FAGSY; Uncharacterized protein
STRINGEMJ181203e-78(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-59LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]