PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01690-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 357aa    MW: 39195.9 Da    PI: 8.3714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01690-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-08127147526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                            C+ f++ G C+ Gd+C FaHg
  augustus_masked-scaffold01690-abinit-gene-0.5-mRNA-1 127 ACPEFRK-GNCRKGDSCEFAHG 147
                                                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.4E-6122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4127149IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-6127147IPR000571Zinc finger, CCCH-type
SMARTSM0035613157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGNPNPTV QVPPWDPFDD QASQISSPLA NFSVNYNANA GNGDHSLLLD SFAALHRYLP  60
SNENDESYSF SDVVQDAFSC DHFRMYEFKV RRCARARSHD WTECPYAHPG EKARRRDPLK  120
FHYSGTACPE FRKGNCRKGD SCEFAHGVFE CWLHPNRYRT QPCKDGPSCG RKVCFFAHSP  180
QQLRVLTQQS GRESGSKFVS SPTSILVSPP VSPQSDSPPL SPTEGRLGSF GSGKSVSELV  240
ASMRKMKMGG GCGGWGNQVG SVSPSGFGSP RASIVRPGFC SSPSTPTTPT RSVTRSGLGP  300
FDLWEMKCEE EPAMERVESG RGVRAQMYAK LSKENSLRRV DSAVSGPDFG WVSELVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876217.10.0zinc finger CCCH domain-containing protein 23-like
RefseqXP_023903742.10.0zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-111C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2N9GWS50.0A0A2N9GWS5_FAGSY; Uncharacterized protein
STRINGVIT_04s0008g00610.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-101C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]