PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 548aa    MW: 61614.9 Da    PI: 6.4514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.31.9e-1391785481374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++ L+ cA+avs++dl +a++l+ +l++++s +g+p+qRl ay++e+L arla+s+
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 178 LKQILIFCAKAVSDNDLLMAHWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSG 234
                                                           5789***************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           s+++kal+++e +   s+e l+++++++ev+P++kf+++ aN aI ea++ e+rvHi
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 235 STICKALKCKEPA---SAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEKRVHI 288
                                                           ************9...9**************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                                           iDf+i qG QW++L+qa+asRp+gpp++RiTg++++ s   +   l  +g++L+k+A
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 289 IDFQIAQGSQWLTLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGLTIVGKKLSKLA 345
                                                           ***********************************888788999************* PP

                                                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           e+++vpfef++ +a +  +++le+L v++gEalaVn++++lh+++desvs++++rd+
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 346 ESFKVPFEFHA-AAMSGCEVQLENLGVQTGEALAVNFAFMLHHMPDESVSTQNHRDR 401
                                                           ***********.89999**************************************** PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           +L+lvkslsPkvv++veqe+++n++ F  rfle+l+yy+a+f+s++++lpre++eri
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 402 LLRLVKSLSPKVVTLVEQESNTNTAAFYPRFLETLNYYTAMFESIDVTLPREHKERI 458
                                                           ********************************************************* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           +vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k++
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 459 NVEQHCLAREVVNILACEGPERVERHELLGKWRSRFKMAGFTPYPLSSLVNATIKTV 515
                                                           ********************************************************* PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l+++ ++ yr++e++g+l+lgW+dr Lv+ +aW+
  augustus_masked-scaffold01722-abinit-gene-0.1-mRNA-1 516 LENYCNK-YRLQERDGALYLGWMDRDLVASCAWK 548
                                                           *****66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.605152529IPR005202Transcription factor GRAS
PfamPF035146.5E-137178548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQASQRLRIS GMSNRLYYQP IREVEANCLP QFQTFDRQPY YNDSSQSSNS YLAQNSYERY  60
CTLESSSANC SYAVHNSPST ISFSPNGSPM SQQDSHSYPA NPHYSPDNTY GSPISGSCIT  120
DDVNDFKHKL KELENVMLGP DCNFLDGYDS SFQNGINNTS PEMDSCRQVM EAISNRNLKQ  180
ILIFCAKAVS DNDLLMAHWL MDELRQMVSV SGEPIQRLGA YMLEGLVARL ASSGSTICKA  240
LKCKEPASAE LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDEKRVHIID FQIAQGSQWL  300
TLIQAFASRP GGPPHIRITG IDDSMSAYAR GGGLTIVGKK LSKLAESFKV PFEFHAAAMS  360
GCEVQLENLG VQTGEALAVN FAFMLHHMPD ESVSTQNHRD RLLRLVKSLS PKVVTLVEQE  420
SNTNTAAFYP RFLETLNYYT AMFESIDVTL PREHKERINV EQHCLAREVV NILACEGPER  480
VERHELLGKW RSRFKMAGFT PYPLSSLVNA TIKTVLENYC NKYRLQERDG ALYLGWMDRD  540
LVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6318554726378Protein SCARECROW
5b3h_A1e-6318554725377Protein SCARECROW
5b3h_D1e-6318554725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916980.10.0scarecrow-like transcription factor PAT1
RefseqXP_023916981.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4H1730.0A0A2I4H173_JUGRE; scarecrow-like transcription factor PAT1
STRINGEMJ167170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]