PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01733-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 232aa    MW: 25830.4 Da    PI: 4.578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01733-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-203080155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++ykGVr++k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  augustus_masked-scaffold01733-abinit-gene-0.0-mRNA-1 30 TKYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 80
                                                          69*****998.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.06E-313090No hitNo description
PfamPF008471.1E-123080IPR001471AP2/ERF domain
SMARTSM003807.9E-343194IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-213189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-303189IPR001471AP2/ERF domain
PROSITE profilePS5103222.6823188IPR001471AP2/ERF domain
PRINTSPR003671.4E-93243IPR001471AP2/ERF domain
PRINTSPR003671.4E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKPTTITTT RSSSSSSREV QQPNSEQSDT KYKGVRRRKW GKWVSEIRLP NSRERIWLGS  60
YDTPEKAARA FDAALFCLRG PDAKFNFPDT PPEININANG RHTLSPQEIR VLAARFANDD  120
DKDSHPPKDN DLILGESSSH MVVDQCYTPS TSSVSDGTVH VDSNNEAMDW SFLSMLDSND  180
MGISSDFGLF SGMESLHSGE MLYPPVLPGP VEDNGDENGA EAYSQQSFLW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1531881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872048.11e-147ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC24e-49ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2N9EGU21e-113A0A2N9EGU2_FAGSY; Uncharacterized protein
STRINGPOPTR_0006s23480.13e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]