PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 278aa MW: 31445.4 Da PI: 8.9895

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.4	8.7e-34	48	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk 49 lp+G++F+Ptd+e++ e+L+ kv+++ ++l+ +++ +i++++P++Lp augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1 48 LPAGVKFDPTDQEIL-EHLEGKVQSDACKLHPlidefipTLEGEnGICYTHPEKLP- 102 799*********9.99*****5553333333222333336******. PP NAM 50 kvkaeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelv 100 v+++ +fF++ +k+y+tg+rk+r+++ + +W++tgk++++l+ +g+++ augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1 103 GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdieggETRWHKTGKTRPILV-SGKVK 158 555666688**************744456555778********.999 PP NAM 101 glkktLvfy..kgrapkgektdWvmheyrl 128 g kk+Lv+y g+++k+ekt+Wvmh+y+l augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1 159 GYKKILVLYtnYGKQRKPEKTNWVMHQYHL 188 *******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-38	43	207	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	48	207	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	49	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTQCNERGDN QTILDTKSKD NPIRTCPSCG HQIKCQDKQA GIHDLPGLPA GVKFDPTDQE 60 ILEHLEGKVQ SDACKLHPLI DEFIPTLEGE NGICYTHPEK LPGVSKDGLV RHFFHRPSKA 120 YTTGTRKRRK VHTDIEGGET RWHKTGKTRP ILVSGKVKGY KKILVLYTNY GKQRKPEKTN 180 WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCGSFIKES LSSKSKGQNG HEDGNLRTNA 240 FFEYYNSSLI AFEQGNQNRA STPQLLSHFA VHNGSFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886067.1	0.0	NAC domain-containing protein 73-like isoform X1
Refseq	XP_023886068.1	0.0	NAC domain-containing protein 73-like isoform X2
Swissprot	O49459	1e-124	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2N9EM07	0.0	A0A2N9EM07_FAGSY; Uncharacterized protein
STRING	EOX99534	1e-160	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-126	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]