PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 446aa    MW: 49783.7 Da    PI: 5.2835
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.87.5e-89434391373
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++lLl+cA a++++d +laq++++ l++ as+ gdp+qRla+ f++AL +r +r +
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1  43 LEKLLLHCASALETNDVTLAQQVMWVLNNVASSVGDPNQRLASWFLRALISRASRVC 99 
                                                           5799***************************************************88 PP

                                                  GRAS  58 selykalppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeerv 112
                                                           ++ ++   +s+ ++    + +++++l  ++++ P+++f++ + N+aIl+a++g  rv
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 100 PTAMNFNGSSTIQR----RLMSVTELagYVDLIPWHRFGFCASNSAILNAIQGFPRV 152
                                                           88776655555443....3333333355***************************** PP

                                                  GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLa 166
                                                           Hi+Df+i++++QWp+L+++La+RpegppslRiT+ +s  s+    + ++ee+g rL 
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 153 HILDFSITHCMQWPTLIDTLAKRPEGPPSLRITVPSSRPSVpplLNVSTEEVGLRLG 209
                                                           **********************************9997777999999********** PP

                                                  GRAS 167 kfAeelgvpfefnvl......................vakrledleleeLrvkpgEa 201
                                                           +fA+  +vpfef+v+                       ++ l+ l++++L+++ +Ea
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 210 NFAKFRDVPFEFRVFdnssspstldevvkckespsfhSESLLAHLNPSTLNLRDDEA 266
                                                           *******************99999999999988887434477889************ PP

                                                  GRAS 202 laVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFle 255
                                                           l++n+++ l +l de+  +++    rd++L+++ksl+P+++v+v++++d++++s+  
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 267 LVINCQHWLRYLSDEQNGSPHgasLRDTFLDIIKSLNPQIIVIVDEDSDLSASSLTS 323
                                                           *************999888777779******************************** PP

                                                  GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                                                           r++ +++y +  fd+le+ lp+es +r+ +E   +g +i n+++ eg++r+er e+ 
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 324 RITTCFNYLWIPFDALETFLPKESCQRMEYESD-IGHKIDNIISFEGFQRIERLESG 379
                                                           *********************************.*********************** PP

                                                  GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                                                            k  +r++++G  ++p+ e+++k++k ll +++  g+ +++e++ lvl+Wk+++ v+
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 380 IKLCQRMTNSGWVSIPFCEETVKEVKDLLDEHA-SGWGMKKEEDMLVLTWKGHNSVF 435
                                                           *********************************.889999***************** PP

                                                  GRAS 370 vSaW 373
                                                           +++W
  augustus_masked-scaffold01934-abinit-gene-0.3-mRNA-1 436 ATVW 439
                                                           **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.80117421IPR005202Transcription factor GRAS
PfamPF035142.6E-8643439IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKAELRGNTS VSLQNPTLFN NTLHSPLSGA LNGCLGSLDG ACLEKLLLHC ASALETNDVT  60
LAQQVMWVLN NVASSVGDPN QRLASWFLRA LISRASRVCP TAMNFNGSST IQRRLMSVTE  120
LAGYVDLIPW HRFGFCASNS AILNAIQGFP RVHILDFSIT HCMQWPTLID TLAKRPEGPP  180
SLRITVPSSR PSVPPLLNVS TEEVGLRLGN FAKFRDVPFE FRVFDNSSSP STLDEVVKCK  240
ESPSFHSESL LAHLNPSTLN LRDDEALVIN CQHWLRYLSD EQNGSPHGAS LRDTFLDIIK  300
SLNPQIIVIV DEDSDLSASS LTSRITTCFN YLWIPFDALE TFLPKESCQR MEYESDIGHK  360
IDNIISFEGF QRIERLESGI KLCQRMTNSG WVSIPFCEET VKEVKDLLDE HASGWGMKKE  420
EDMLVLTWKG HNSVFATVWI PNGLED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-503744281475Protein SHORT-ROOT
5b3h_B3e-513744227421Protein SHORT-ROOT
5b3h_E3e-513744227421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876823.10.0scarecrow-like protein 32
TrEMBLA0A2N9IXW50.0A0A2N9IXW5_FAGSY; Uncharacterized protein
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein