PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 198aa MW: 22559.6 Da PI: 9.6209

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++++G g+W++ ++ g++R++k+c++rw +yl augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1 13 KGAWSQEEDQKLIAYIQKHGEGCWRSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.9e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1 66 RGNFEEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNHWNSH 110 899*****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-25	4	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.952	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-29	12	107	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-14	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.80E-11	15	60	No hit	No description
PROSITE profile	PS51294	27.073	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-25	64	115	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	66	110	IPR001005	SANT/Myb domain
CDD	cd00167	7.55E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MRKPCCKKEE TNKGAWSQEE DQKLIAYIQK HGEGCWRSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGNFE EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNHWNSH IRKKLTQMGI 120 DPNKPHKLGG TASFTGISFF SQNQAPNPVN VRRDDNQILG FESGVESNKT SCVPDLNLDL 180 TLSTPTSTLV EERQQPKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-30	10	115	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023878006.1	1e-143	myb-related protein 308-like
Swissprot	P81393	7e-76	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2N9H6M5	1e-114	A0A2N9H6M5_FAGSY; Uncharacterized protein
STRING	XP_010274638.1	1e-87	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-72	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]