PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02159-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 171aa    MW: 19168.6 Da    PI: 10.2642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02159-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008590112123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++Cg  F     L  H+r+H
  augustus_masked-scaffold02159-abinit-gene-0.0-mRNA-1  90 HECSICGLEFAMGQALGGHMRRH 112
                                                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-740112No hitNo description
PfamPF139123.4E-124066IPR007087Zinc finger, C2H2
SMARTSM003550.34164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7644169IPR007087Zinc finger, C2H2
PROSITE patternPS0002804364IPR007087Zinc finger, C2H2
SMARTSM003550.2290112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.24590117IPR007087Zinc finger, C2H2
PfamPF139126.4E-1190114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAMKRMREDG GIGSLDMANC LMLLSHSLET KPKKDSRVDV FECKTCNRQF PSFQALGGHR  60
SASHKRPKLM GEELKESTKT QNLGNKPKMH ECSICGLEFA MGQALGGHMR RHRAMMDGAF  120
SSATIEKKVP VLKRSNSKRV MCLDLNLTPL ENDLKLLFGK KAPQIDFTLM I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921570.11e-117zinc finger protein ZAT11-like
SwissprotQ9SLD46e-43ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2N9EGY91e-103A0A2N9EGY9_FAGSY; Uncharacterized protein
STRINGGorai.006G176000.12e-73(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-45C2H2 family protein