PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02163-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 198aa    MW: 22091 Da    PI: 9.2082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02163-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-184494155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  augustus_masked-scaffold02163-abinit-gene-0.0-mRNA-1 44 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPIPEMAAKAYDVAAYCLKG 94
                                                          68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124494IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2145104IPR016177DNA-binding domain
PROSITE profilePS5103223.44645102IPR001471AP2/ERF domain
SMARTSM003802.2E-3545108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3145103IPR001471AP2/ERF domain
CDDcd000184.94E-3046103No hitNo description
PRINTSPR003671.1E-124657IPR001471AP2/ERF domain
PRINTSPR003671.1E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEQLPYTEDD TTTTTTTSTT TTTTTTTTTS PTSPQSERSG TRHPVYRGVR KRRWGKWVSE  60
IREPRKKSRI WLGSFPIPEM AAKAYDVAAY CLKGRKAQLN FPDEVEHLPR PSTCTARDIQ  120
AAAAKAAHMM ASEITKKKKK NIIKNKKSHV VSSDADDFWA EIELPELMIS GPCGWSFTGD  180
GSTWPDGDFV AQPFMACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1840104974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135146KKKKKNIIKNKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893046.11e-98ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-66ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2N9G4C23e-83A0A2N9G4C2_FAGSY; Uncharacterized protein
STRINGXP_002523328.17e-75(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-62ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]