PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 249aa    MW: 29359.3 Da    PI: 9.6858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.9e-10127213280
                                                           EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE CS
                                                    B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkl 50 
                                                           +k+lt+ d     +rl++ k ++e++       +++ ee++ ++++de+g+++ + +
  augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1 127 EKQLTKTDLRDDqARLSIKKAYVEQYllnllneDENIEEGIPVIVYDENGKTYPMMF 183
                                                           577766666554599****************99666678999*************** PP

                                                           ..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
                                                    B3  51 iyrkksgryvltkGWkeFvkangLk.egDfv 80 
                                                           + + ++  yvlt GWk F  + +L    Df+
  augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1 184 KLWSSK-IYVLTHGWKTFYIDSKLHyHDDFI 213
                                                           888775.8***************99444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.76E-12126234No hitNo description
SuperFamilySSF1019363.73E-13126213IPR015300DNA-binding pseudobarrel domain
PfamPF037545.3E-7126198IPR005508B3 domain-containing protein
PROSITE profilePS508639.122127237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-12127211IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKRKWLCEI EKFNGDDEYS EECIKEEEAA LILLDMSNTK SLDKKTAMAL REQQRKRLEN  60
RTRLRQRLNL NPHVKGISKS IPKTLLPSMR GHEEILALFM KSSKAPLFPR ITSLLGLIKE  120
CCSVPYEKQL TKTDLRDDQA RLSIKKAYVE QYLLNLLNED ENIEEGIPVI VYDENGKTYP  180
MMFKLWSSKI YVLTHGWKTF YIDSKLHYHD DFITSVTLWT FRHLRTARLC FVIFTKTLPV  240
VKPVTRRIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14356KKTAMALREQQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883438.11e-151putative B3 domain-containing protein At4g03170
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-18B3 family protein