PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02294-abinit-gene-0.5-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 79aa MW: 8621.62 Da PI: 5.6128

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02294-abinit-gene-0.5-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36.6	1.3e-11	3	50	53	100
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 r a++++ +e++ r++dPvyG+vg+i++lq+q+ +++el+++k+e augustus_masked-scaffold02294-abinit-gene-0.5-mRNA-1 3 LRAVAADCMSFESRSRVEDPVYGSVGIITQLQEQIIAAQSELVKTKDE 50 58899**************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.211	1	51	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-9	3	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MHLRAVAADC MSFESRSRVE DPVYGSVGII TQLQEQIIAA QSELVKTKDE IAFHNAQRTT 60 TTTTTNAAAA NDSCYCPRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023892503.1	2e-27	LOB domain-containing protein 24-like
TrEMBL	A0A2K1YZY8	2e-17	A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRING	XP_010270541.1	5e-17	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	1e-12	LOB domain-containing protein 23