PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02344-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 172aa    MW: 19217.1 Da    PI: 7.7822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02344-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124769123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C++C + F ++  L  H++ H
  augustus_masked-scaffold02344-abinit-gene-0.5-mRNA-1 47 FSCNYCQRKFYSSQALGGHQNAH 69
                                                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-43972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDFQPNTSLH LGLQSNNQPN LDLVEPTPPS LSSSSSSHLS HSEPRIFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSR ELSSTILPHG GPTYHNRSGP NNISGPSQFH HIQPPIEHHG  120
NAARFASDHT CYGMREMEYG SREGAGSSWH KGYRPAENVQ EEFNQLDLSL RL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921059.11e-105zinc finger protein 7-like
TrEMBLA0A2N9IMT31e-68A0A2N9IMT3_FAGSY; Uncharacterized protein
STRINGcassava4.1_029187m8e-50(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-28zinc finger protein 2