PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28096.7 Da    PI: 8.4606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.3e-212664745
                                                          HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                                SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                                          ++rqvtfskRr+g++KKA+EL+vLC+aevav+++ +++k
  augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1 26 TKRQVTFSKRRAGLFKKASELCVLCGAEVAVMVITEKDK 64
                                                          79*******************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.3531372IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-191371IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-81434IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2014104IPR002100Transcription factor, MADS-box
PfamPF003191.6E-192664IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-83449IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-84970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDMVIPKKTK KTQGRQKIEV KQLEGTKRQV TFSKRRAGLF KKASELCVLC GAEVAVMVIT  60
EKDKDKDKEN EKGKGKTYCF GHPDVDTVVN RYLSENNNNN NNNNNDDNSG FGDLLPVDVN  120
EFNRQYAEAE KVLEKEKRHL AEIEQKVKER VGGLWWDEAL DDNMGLEEMH QYKWALQEVR  180
KKVVDRVNEM RMNKSMSKSP VVVPSVDLRL GDVGLGNGFV HPSNLQGGNN GGGGFFHSHG  240
LGFGPFGQGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917059.11e-143agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J4P16e-76A0A2N9J4P1_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-27AGAMOUS-like 61