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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
GRAS |
| Protein Properties |
Length: 344aa MW: 39046.8 Da PI: 4.9799 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 243.4 | 9.1e-75 | 19 | 341 | 76 | 373 |
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqa 131
++ l f++++P+++f++ +aN aIl+aveg +++Hi+D+++++++Q p+L +a
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 19 FSIIELASFVDLTPWHRFGFTAANAAILDAVEGYTAIHIVDLSMTHCMQIPTLVDA 74
34444455************************************************ PP
GRAS 132 LasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
+a+R e pp l++T+v s e + ++ e+g++L +fA++ +v +ef+v+
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 75 IANRHEVPPLLKLTVVTSLEDVppiLDLSYDELGSKLVNFARSKNVMMEFRVIpss 130
******************998899889999**********************9876 PP
GRAS 182 vakrledleleeLrvkp......gEalaVnlvlqlhrll................d 215
+ + +++l +e+Lrv++ +Eal++n++++lh+++
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 131 YKDGFANL-IEQLRVQNyvyaesNEALVINCHMMLHYIPeetlvaiptsnsslyaY 185
55667777.99999999999999*******************************96 PP
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
e +++s r+ +Lk+++sl P++vvvv+++ad +s++++ r+ +a++y + +d++
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 186 EFSPSSSLRTMFLKALRSLDPTIVVVVDEDADFTSNNLVCRLRSAFNYLWIPYDTM 241
6677777899********************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
++ lpr s +r+++E+ + ++i+nv+a+eg +r+er e +++W +r+++a F+ +
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 242 DSFLPRGSMQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGI 296
*****************.************************************** PP
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++e+a++++k++l +++ g+ +++e++ lvl+Wk++++++++aW
augustus_masked-scaffold02499-abinit-gene-0.12-mRNA-1 297 AFGEDAVSEVKTMLDEHA-AGWGLKKEEEDLVLTWKGHNVLFATAW 341
******************.899************************ PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MLAAMANAHS NLAMDVYKFS IIELASFVDL TPWHRFGFTA ANAAILDAVE GYTAIHIVDL 60
SMTHCMQIPT LVDAIANRHE VPPLLKLTVV TSLEDVPPIL DLSYDELGSK LVNFARSKNV 120
MMEFRVIPSS YKDGFANLIE QLRVQNYVYA ESNEALVINC HMMLHYIPEE TLVAIPTSNS 180
SLYAYEFSPS SSLRTMFLKA LRSLDPTIVV VVDEDADFTS NNLVCRLRSA FNYLWIPYDT 240
MDSFLPRGSM QRQWYEADIC WKIENVIAHE GLQRVERLEP KSRWVQRMRN ANFRGIAFGE 300
DAVSEVKTML DEHAAGWGLK KEEEDLVLTW KGHNVLFATA WVPA
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
